Files

• Note: There are many subfolders with parameters defined per condition. Given that CMD is quite unique in that it has multiple diseases in one module, I believe it may be best to keep this structure as-is for now. One day when we decide to refactor and create modules by disease (e.g. one specific to hypertension, diabetes, ...) then that may be the best time to refactor the parameter files. Thoughts? @marghe-molaro @mnjowe
• Deleted folders and sub-files that were not in use in the module:
  • ResourceFile_cd_condition_and_events_incidence
  • ResourceFile_cd_condition_incidence
  • ResourceFile_cd_event_incidence
  • ResourceFile_cd_event_prevalence

Parameters to review (documented by folder)

Folder: ResourceFile_cmd_condition_death & ResourceFile_cmd_condition_onset & ResourceFile_cmd_condition_removal

• Most rr marked as universal except the following which I believe to have local basis:
  • rr of urbanicity & wealth
  • rr of marital status, education, sanitation, wood burning stove
  • rr depression

Folder: ResourceFile_cmd_condition_hsi

• pr_treatment_works: marked as local because believe it takes into account other factors beyond medication

Folder: ResourceFile_cmd_condition_prevalence

• Have min and max values documented. I am labeling the prior_note as 'CI'. Have not gone into the documentation to determine exactly what the prior min and max are references to

Folder: ResourceFile_cmd_condition_prevalence

• File hypertension.csv is empty

Folder: ResourceFile_cmd_condition_prevalence

• Only has file hypertension.csv

Remain hardcoded

• All medical consumables and dosages

Analysis Scripts

Checked to run analysis files before and after modifications. The file cardiometabolicdisorders_plots.py has the error ZeroDivisionError: division by zero